Integrative Bioinformatics

Integrative Bioinformatics Modeling for Biological Discovery

11/24/2021

This is an update on the Metabolic Trap Hypothesis for ME/CFS with research conducted at the ME/CFS Collaborative Research Center at Stanford University. Thi...

Dr Phair is contributing to an international effort to map the mechanism of SARS-COV-2.  The results are currently in pr...
11/06/2020

Dr Phair is contributing to an international effort to map the mechanism of SARS-COV-2. The results are currently in pre-print.

We hereby describe a large-scale community effort to build an open-access, interoperable, and computable repository of COVID-19 molecular mechanisms - the COVID-19 Disease Map. We discuss the tools, platforms, and guidelines necessary for the distributed development of its contents by a multi-facete...

12/21/2019
Watch this important event via livestream starting at 9am PDT today.
09/07/2019

Watch this important event via livestream starting at 9am PDT today.

03/27/2019
Dr Phair of Integrative BioInformatics spoke at the Emerge Australia Inc conference on ME/CFS this past week. Recordings...
03/16/2019

Dr Phair of Integrative BioInformatics spoke at the Emerge Australia Inc conference on ME/CFS this past week. Recordings of the conference will be available soon.

Integrative BioInformatics will be attending the 2019 ME/CFS International Research Symposium.  Robert Phair's talk will...
02/25/2019

Integrative BioInformatics will be attending the 2019 ME/CFS International Research Symposium. Robert Phair's talk will be on March 14.

  EARLY BIRD REGISTRATION NOW OPEN Emerge is proud to host this international research symposium on ME/CFS supported by funding from the Australian Government Department of Health. It presents an …

09/04/2018

Reminder: *In-person AND free livestream registration are now open* for the Chronic Fatigue Syndrome Research Center at Stanford University's Second Annual Community Symposium on the Molecular Basis of ME/CFS, sponsored by Open Medicine Foundation, on Saturday, September 29, 2018.

Livestream registration: http://bit.ly/2MN0lq7

In-person registration: http://bit.ly/2OXxm14

Join us to hear from our amazing team! This is a unique opportunity to learn from and interact with these world-class scientists.

Find more event details here: http://bit.ly/2u59Eaq

08/22/2018

Jessica Taylor Bearman, 28, had such a severe form of the disease, she’s been ill for 13 years, two of those in a comatose state

This is why we're working 10-hour days, 7 days a week, to understand the mechanism of ME/CFS.
08/08/2018

This is why we're working 10-hour days, 7 days a week, to understand the mechanism of ME/CFS.

In recognition of , we're sharing this account from Janet Dafoe of a recent interaction with her son Whitney and her husband Dr. Ron Davis:

"Another really moving ativan session with Whitney. [Ativan gives Whitney enough strength to communicate via signs for short periods.]

As our session was nearing its end because the ativan effect was wearing off, Whitney pantomimed to his dad asking him how long until he had something new to try that would help him. Ron gestured, 'as soon as I can.'

Whitney 'told' us that he feels he's going downhill and doesn't have lots of time left. Ron told him he's working all day every day with the team and they are working hard and he believes he will have something for him. He 'told' us how his stomach hurts all the time, that he's afraid it will get worse and he won't be able to use the j tube, how his brain is cloudy (hands making blobs in the air and then an airplane flying through the blobs = cloudy!) and sometimes empty and how awful that is for hours and days at a time.

Whitney gestured for us not to worry, he's not giving up. Then he made a gesture of the whole world full of sick ME/CFS patients suffering, and gestured, 'If I get better then people all around the world will be able to get better too, right?' His dad nodded. So Whitney sat up and pantomimed, 'I am not giving up! I will keep fighting!'

His gestures were fists fighting in a boxing match. With energy. It was amazing. Then he laid back down, tears streaming down his face, gestured hearts and thank you hands, and that it was time to leave. ARGHHH He really, really is conscious of fighting this not only for himself but for all of you. I'm blown away."

Our thoughts today are with Whitney, his family, and everyone affected by severe ME/CFS. We are inspired by your perseverance and will continue doing everything we can to find solutions.

06/14/2018

On this we introduce you to researcher Robert Phair, PhD, running the OMF-funded metabolic trap project. Today, Dr. Phair shares his personal connections and how he became a part of OMF’s End ME/CFS research project.

“I was a professor of physiology and biomedical engineering at The Johns Hopkins School of Medicine for 16 years before co-founding (with Ann Chasson) Integrative Bioinformatics Inc, a scientific consulting and software development firm in Mountain View, CA. We combine basic principles from human biology and systems engineering to test complex biological theories against experimental and clinical data. Our clients are scientists at research institutions and pharmaceutical firms.

My neighbor, Marilyn S., is a ME/CFS patient. She and I had been discussing ME/CFS at weekly neighborhood get-togethers for about two years when another neighbor, Karin Molander, gave us a copy of her Stanford Medical School alumni magazine with an article, written by Tracie White, telling the story of the Davis/Dafoe family and Ron Davis' ME/CFS research effort at the Stanford Genome Technology Center (SGTC).

A chain of family friendships in Silicon Valley linked me to Laurel Crosby, PhD, a member of the Davis team. Laurel invited me to visit SCTC and talk with her and Ron. I spoke with them for a half hour in July 2016, and it was obvious we all thought a collaboration was a good idea.

I worked as a volunteer for a year and a half learning everything I could about ME/CFS. The great thing about this collaboration was that, for the first time, I actually had ME/CFS data to analyze and a bunch of smart colleagues with whom to work. During this period, the first results of the OMF-funded, Severely Ill Patient Study (SIPS) became available. These data included whole genome sequencing for 20 patients, and I began to look, one gene at a time, for potential genetic predispositions. Eighty-six genes later, I found a gene for which every SIPS patient had at least one damaged copy. But because another gene provided a biological workaround, it took me all summer to imagine a theory that might explain the origin of ME/CFS based on this common mutation. This is the theory I called the "Metabolic Trap."

When I presented my theory to the SGTC ME/CFS team, I felt definite enthusiasm. That night I got a rare text from Ron: "That was an outstanding presentation." Naturally, this made me feel great, and shortly afterwards, OMF funded the project, in February, 2018. This made it immediately possible for our company to collaborate with SGTC scientists, Curt Fischer and Julie Wilhelmy (also OMF-funded).

We're doing experimental tests of the metabolic trap hypothesis by applying the techniques of tracer kinetics and mass spectrometry to white blood cells from ME/CFS patients and people who are healthy. The first experiments are well underway. The reason I want to work on this disease, the reason I've invested so many days and nights, will be obvious to anyone who is or cares for or knows a victim of ME/CFS. Anyone who has read Hillary Johnson's Osler's Web or has seen the moving documentary films, like Jen Brea's Unrest, knows why we are working. Anyone who has attended a Millions Missing rally and listened to Ron Davis and Janet Dafoe speak so eloquently about the tragedy and the courageous hope of their son, Whitney, has felt in their hearts the reason this work is so important to me. We've seen Whitney's Plea. We won't give up.”

Thank you Dr. Phair for being a part of our stellar team. Read more about Dr. Phair’s metabolic trap project: http://bit.ly/2rVzbSC

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